Variant report

Variant	rs73090753
Chromosome Location	chr3:59628118-59628119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55633978	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73090736	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv998711	chr3:59542279-59704503	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59620400-59634400	Weak transcription	Pancreas	Pancrea
2	chr3:59624600-59631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:59626600-59628200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:59627200-59628200	Enhancers	Fetal Brain Male	brain
5	chr3:59627200-59628200	Enhancers	Fetal Muscle Leg	muscle
6	chr3:59627400-59628200	Enhancers	Adipose Nuclei	Adipose
7	chr3:59627400-59628200	Enhancers	Aorta	Aorta
8	chr3:59627400-59628200	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:59627400-59628200	Enhancers	Ovary	ovary
10	chr3:59627800-59628600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:59628000-59630200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:59628000-59631400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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