Variant report

Variant	rs73092678
Chromosome Location	chr3:59740825-59740826
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs41464544	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4679504	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68003332	0.80[AMR][1000 genomes]
rs73092672	0.80[AMR][1000 genomes]
rs73092692	0.97[EUR][1000 genomes]
rs73092694	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094522	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs994931	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59735800-59742400	Weak transcription	Ovary	ovary
2	chr3:59737600-59741600	Enhancers	Fetal Thymus	thymus
3	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
4	chr3:59738400-59742200	Enhancers	Dnd41	blood
5	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:59738600-59741000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:59738800-59741600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:59739400-59741000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:59739400-59741400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:59739600-59741000	Enhancers	NHDF-Ad	bronchial
14	chr3:59739600-59741400	Enhancers	Thymus	Thymus
15	chr3:59739800-59741200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:59739800-59741400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:59740000-59741000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:59740200-59741200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:59740200-59741200	Weak transcription	HSMMtube	muscle
21	chr3:59740200-59742400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:59740200-59743800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:59740200-59743800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:59740200-59744800	Weak transcription	Fetal Lung	lung
25	chr3:59740200-59746000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:59740400-59741000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:59740400-59744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:59740400-59744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:59740600-59741600	Enhancers	Stomach Mucosa	stomach
30	chr3:59740600-59743800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:59740600-59744000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:59740800-59741000	Enhancers	Duodenum Mucosa	Duodenum
33	chr3:59740800-59741200	Enhancers	Fetal Intestine Small	intestine
34	chr3:59740800-59741200	Enhancers	Fetal Stomach	stomach
35	chr3:59740800-59741800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:59740800-59743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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