Variant report

Variant	rs994931
Chromosome Location	chr3:59741758-59741759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11130732	0.83[CEU][hapmap]
rs17361780	0.83[CEU][hapmap]
rs293605	0.81[AMR][1000 genomes]
rs41464544	1.00[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4679504	0.95[EUR][1000 genomes]
rs73092678	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73092692	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092694	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094522	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59735800-59742400	Weak transcription	Ovary	ovary
2	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
3	chr3:59738400-59742200	Enhancers	Dnd41	blood
4	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:59740200-59742400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:59740200-59743800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:59740200-59743800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:59740200-59744800	Weak transcription	Fetal Lung	lung
13	chr3:59740200-59746000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:59740400-59744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:59740400-59744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:59740600-59743800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:59740600-59744000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:59740800-59741800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:59740800-59743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:59741000-59744600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:59741000-59744600	Weak transcription	NHDF-Ad	bronchial
22	chr3:59741000-59745000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:59741200-59744000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:59741200-59744800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:59741200-59745000	Weak transcription	Fetal Intestine Small	intestine
26	chr3:59741400-59744600	Weak transcription	Thymus	Thymus
27	chr3:59741400-59745000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:59741400-59746600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:59741600-59743200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr3:59741600-59744400	Weak transcription	Fetal Thymus	thymus
31	chr3:59741600-59744600	Weak transcription	Stomach Mucosa	stomach
32	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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