Variant report

Variant	rs73092916
Chromosome Location	chr5:58626677-58626678
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57778711	1.00[AMR][1000 genomes]
rs73092938	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092947	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092960	1.00[AMR][1000 genomes]
rs73092980	1.00[AMR][1000 genomes]
rs73092997	1.00[AMR][1000 genomes]
rs73093002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58612800-58627200	Weak transcription	Aorta	Aorta
2	chr5:58613600-58628600	Weak transcription	Gastric	stomach
3	chr5:58618800-58629000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:58623400-58628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:58623800-58627800	Enhancers	Fetal Heart	heart
6	chr5:58624600-58630000	Weak transcription	Fetal Intestine Small	intestine
7	chr5:58625000-58627000	Weak transcription	Fetal Brain Male	brain
8	chr5:58625000-58627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:58625000-58627200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:58625000-58628400	Weak transcription	Brain Angular Gyrus	brain
11	chr5:58625000-58628400	Weak transcription	Fetal Stomach	stomach
12	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
16	chr5:58625200-58627200	Weak transcription	Right Ventricle	heart
17	chr5:58625200-58628200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:58625400-58628400	Weak transcription	Fetal Lung	lung
19	chr5:58625400-58630800	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:58626200-58626800	Enhancers	Psoas Muscle	Psoas
21	chr5:58626200-58627200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr5:58626200-58627400	Enhancers	Right Atrium	heart
23	chr5:58626200-58629400	Weak transcription	Hela-S3	cervix
24	chr5:58626600-58626800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:58626600-58626800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr5:58626600-58629200	Genic enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links