Variant report

Variant	rs73092940
Chromosome Location	chr5:58634177-58634178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57778711	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092980	1.00[AMR][1000 genomes]
rs73092997	1.00[AMR][1000 genomes]
rs73093002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
2	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:58631000-58635800	Enhancers	A549	lung
5	chr5:58631000-58636000	Enhancers	Fetal Heart	heart
6	chr5:58631200-58634600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:58632400-58634600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr5:58633400-58634200	Enhancers	Colon Smooth Muscle	Colon
9	chr5:58633600-58635600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:58634000-58634400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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