Variant report

Variant	rs73093475
Chromosome Location	chr5:57531367-57531368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57530338..57532834-chr5:57737218..57739511,2	MCF-7	breast:
2	chr5:57517523..57520170-chr5:57529878..57532281,2	MCF-7	breast:
3	chr5:57529817..57531823-chr5:57533642..57536408,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050752	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053492	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10059003	0.91[AMR][1000 genomes]
rs10060242	0.91[AMR][1000 genomes]
rs10060611	0.91[AMR][1000 genomes]
rs10061000	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062675	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065354	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065507	0.82[AFR][1000 genomes]
rs10065512	0.91[AMR][1000 genomes]
rs10066069	0.91[AMR][1000 genomes]
rs10066640	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10471447	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56050425	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58843428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59225760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60039914	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60819061	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896419	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091780	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093450	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093453	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093472	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73757723	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73757726	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727855	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
5	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
6	chr5:57527200-57532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:57527200-57535600	Weak transcription	HMEC	breast
8	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:57530400-57532200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:57530600-57531400	Enhancers	Hela-S3	cervix
11	chr5:57530800-57531400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:57530800-57531600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:57530800-57531600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:57530800-57532000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:57531000-57531400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:57531000-57531400	Enhancers	NHEK	skin
17	chr5:57531000-57531600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:57531000-57531600	Enhancers	Osteobl	bone
19	chr5:57531000-57531800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr5:57531200-57531400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr5:57531200-57531600	Enhancers	A549	lung
22	chr5:57531200-57531600	Enhancers	NHDF-Ad	bronchial

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