Variant report

Variant	rs73757726
Chromosome Location	chr5:57525873-57525874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10059003	0.91[AMR][1000 genomes]
rs10060242	0.91[AMR][1000 genomes]
rs10060611	0.91[AMR][1000 genomes]
rs10061000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065507	0.83[AFR][1000 genomes]
rs10065512	0.91[AMR][1000 genomes]
rs10066069	0.91[AMR][1000 genomes]
rs10066640	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10471447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56050425	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58843428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59225760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60039914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60819061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093475	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093479	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73757723	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7727855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520600-57526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57520800-57526000	Weak transcription	NHEK	skin
3	chr5:57521000-57526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:57522600-57531000	Weak transcription	Osteobl	bone
6	chr5:57523000-57526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:57525200-57526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:57525200-57528600	Enhancers	A549	lung
9	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:57525800-57526200	Enhancers	Aorta	Aorta
11	chr5:57525800-57526200	Enhancers	Psoas Muscle	Psoas
12	chr5:57525800-57527200	Enhancers	HMEC	breast
13	chr5:57525800-57527400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:57525800-57527600	Enhancers	Hela-S3	cervix

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