Variant report

Variant	rs73093941
Chromosome Location	chr3:60062997-60062998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13062539	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13084717	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13100563	0.98[EUR][1000 genomes]
rs17062101	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17062179	0.83[EUR][1000 genomes]
rs17258256	0.87[EUR][1000 genomes]
rs17258709	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17258872	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34603508	0.86[EUR][1000 genomes]
rs35037895	0.85[EUR][1000 genomes]
rs35755790	0.98[EUR][1000 genomes]
rs4345028	0.88[EUR][1000 genomes]
rs67030566	0.87[EUR][1000 genomes]
rs67984492	0.96[EUR][1000 genomes]
rs73093924	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv523496	chr3:60059041-60064296	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519729	chr3:60062654-60064296	Weak transcription Flanking Active TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60051800-60063000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:60059800-60064800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:60061000-60064000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr3:60061400-60063400	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr3:60061600-60063000	Enhancers	Primary B cells from cord blood	blood
6	chr3:60061600-60063200	Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr3:60061800-60063000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:60061800-60064200	Weak transcription	Fetal Thymus	thymus
9	chr3:60061800-60066400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:60061800-60068400	Flanking Active TSS	Dnd41	blood
11	chr3:60062200-60063200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr3:60062400-60063000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:60062400-60063200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:60062400-60064600	Weak transcription	Thymus	Thymus
15	chr3:60062400-60065200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:60062400-60066200	Weak transcription	Stomach Mucosa	stomach
17	chr3:60062400-60066400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:60062400-60066400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:60062600-60063600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:60062800-60063400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:60062800-60064800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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