Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60044792..60047333-chr3:60050018..60052719,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13062539	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13084717	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13100563	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs17062101	0.81[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17257269	1.00[CEU][hapmap]
rs17258709	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17258872	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17325940	1.00[YRI][hapmap]
rs34603508	0.84[EUR][1000 genomes]
rs35066861	0.89[EUR][1000 genomes]
rs35226385	0.85[EUR][1000 genomes]
rs35755790	0.89[EUR][1000 genomes]
rs3856662	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]
rs4345028	0.86[EUR][1000 genomes]
rs67030566	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779716	0.86[EUR][1000 genomes]
rs6779755	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]
rs67984492	0.90[EUR][1000 genomes]
rs73093924	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73093941	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60041000-60049000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:60042000-60051600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60042800-60050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:60043000-60051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:60043600-60047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:60044000-60048200	Genic enhancers	Dnd41	blood
7	chr3:60044800-60050200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:60045000-60054200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:60045600-60050200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:60045800-60052400	Enhancers	Primary T cells from cord blood	blood
11	chr3:60046400-60048200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:60046600-60047000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:60046600-60047000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:60046600-60047200	Enhancers	Fetal Thymus	thymus
15	chr3:60046800-60047000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:60046800-60051800	Enhancers	Thymus	Thymus

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