Variant report

Variant	rs17257269
Chromosome Location	chr3:60025505-60025506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11925432	0.89[ASN][1000 genomes]
rs13060068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13061158	0.98[EUR][1000 genomes]
rs13062539	0.81[EUR][1000 genomes]
rs13084717	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13100563	0.81[CEU][hapmap]
rs17061932	1.00[ASN][1000 genomes]
rs17061972	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17062101	0.81[CEU][hapmap]
rs17256807	0.99[EUR][1000 genomes]
rs17258256	1.00[CEU][hapmap]
rs212010	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs212036	1.00[CHB][hapmap]
rs212038	1.00[CHB][hapmap]
rs2366953	1.00[CHB][hapmap]
rs2630165	1.00[CHB][hapmap]
rs2630182	1.00[CHB][hapmap]
rs2630205	1.00[CHB][hapmap]
rs2736763	1.00[CHB][hapmap]
rs34267930	0.89[ASN][1000 genomes]
rs34732137	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35066861	0.83[EUR][1000 genomes]
rs35226385	0.86[EUR][1000 genomes]
rs3845974	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs3856662	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4024131	1.00[ASN][1000 genomes]
rs4679629	1.00[CHB][hapmap]
rs4679631	1.00[CHB][hapmap]
rs57439204	0.89[ASN][1000 genomes]
rs6446109	1.00[CHB][hapmap]
rs6446110	1.00[CHB][hapmap]
rs67136973	0.89[ASN][1000 genomes]
rs6773600	1.00[CHB][hapmap]
rs6779716	0.85[EUR][1000 genomes]
rs6779755	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6782148	1.00[CHB][hapmap]
rs6797474	1.00[CHB][hapmap]
rs7609578	1.00[CHD][hapmap]
rs7642268	1.00[CHD][hapmap]
rs986651	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv876839	chr3:60024084-60039488	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60020200-60030000	Weak transcription	Primary T cells from cord blood	blood
2	chr3:60021000-60031600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:60021800-60026400	Weak transcription	Fetal Thymus	thymus
4	chr3:60022200-60030000	Weak transcription	Thymus	Thymus
5	chr3:60022600-60026200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:60022800-60026200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:60023000-60028000	Weak transcription	Dnd41	blood
8	chr3:60025200-60026600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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