Variant report

Variant	rs67136973
Chromosome Location	chr3:60050628-60050629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60044792..60047333-chr3:60050018..60052719,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13060068	0.89[ASN][1000 genomes]
rs17061932	0.89[ASN][1000 genomes]
rs17257269	0.89[ASN][1000 genomes]
rs212010	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212036	0.82[ASN][1000 genomes]
rs212038	0.82[ASN][1000 genomes]
rs2223085	0.89[ASN][1000 genomes]
rs2366953	0.89[ASN][1000 genomes]
rs2630165	0.89[ASN][1000 genomes]
rs2630182	0.89[ASN][1000 genomes]
rs2630195	0.89[ASN][1000 genomes]
rs2630205	0.89[ASN][1000 genomes]
rs2736763	0.89[ASN][1000 genomes]
rs2736776	0.89[ASN][1000 genomes]
rs2736820	0.89[ASN][1000 genomes]
rs34267930	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34732137	0.89[ASN][1000 genomes]
rs4024129	0.90[ASN][1000 genomes]
rs4024131	0.89[ASN][1000 genomes]
rs4679629	0.89[ASN][1000 genomes]
rs4679631	0.89[ASN][1000 genomes]
rs6446109	0.89[ASN][1000 genomes]
rs6446110	0.89[ASN][1000 genomes]
rs6773600	0.89[ASN][1000 genomes]
rs6782148	0.89[ASN][1000 genomes]
rs6797474	0.89[ASN][1000 genomes]
rs9833389	0.89[ASN][1000 genomes]
rs986651	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60042000-60051600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:60043000-60051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:60045000-60054200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr3:60045800-60052400	Enhancers	Primary T cells from cord blood	blood
5	chr3:60046800-60051800	Enhancers	Thymus	Thymus
6	chr3:60047400-60052200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:60048200-60054000	Enhancers	Dnd41	blood
8	chr3:60048800-60059400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:60049000-60051800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:60049200-60052000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr3:60049400-60053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr3:60049800-60052000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:60049800-60052200	Enhancers	Fetal Thymus	thymus
14	chr3:60050000-60051400	Enhancers	NH-A	brain
15	chr3:60050000-60052000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:60050200-60051200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:60050200-60051200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:60050200-60051200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:60050200-60051200	Enhancers	Stomach Mucosa	stomach
20	chr3:60050200-60051200	Enhancers	Osteobl	bone
21	chr3:60050200-60051400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:60050200-60051400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:60050200-60051600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:60050200-60051600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:60050200-60051600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:60050400-60050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:60050400-60050800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:60050400-60050800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:60050400-60050800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr3:60050400-60051000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr3:60050400-60051200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:60050400-60051200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:60050400-60051200	Enhancers	Fetal Heart	heart
34	chr3:60050400-60051200	Enhancers	NHDF-Ad	bronchial
35	chr3:60050400-60051400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:60050400-60051600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:60050600-60051000	Enhancers	Brain Hippocampus Middle	brain
38	chr3:60050600-60051400	Enhancers	Primary hematopoietic stem cells	blood
39	chr3:60050600-60051600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr3:60050600-60051800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links