Variant report

Variant	rs17061932
Chromosome Location	chr3:60034521-60034522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925432	0.89[ASN][1000 genomes]
rs13060068	1.00[ASN][1000 genomes]
rs17061972	0.89[ASN][1000 genomes]
rs17257269	1.00[ASN][1000 genomes]
rs212010	0.89[ASN][1000 genomes]
rs34267930	0.89[ASN][1000 genomes]
rs34732137	1.00[ASN][1000 genomes]
rs3845974	0.89[ASN][1000 genomes]
rs4024131	1.00[ASN][1000 genomes]
rs57439204	0.89[ASN][1000 genomes]
rs67136973	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv876839	chr3:60024084-60039488	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60031600-60035200	Enhancers	Fetal Thymus	thymus
2	chr3:60033000-60035000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr3:60033000-60035400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:60033200-60035000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:60033200-60035000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:60033600-60034600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr3:60033600-60035000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr3:60033600-60035000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:60033600-60035000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr3:60033800-60034600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:60033800-60034800	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr3:60033800-60035000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:60034000-60034600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:60034200-60034600	Flanking Active TSS	Thymus	Thymus
15	chr3:60034400-60034600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:60034400-60034600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:60034400-60034600	Enhancers	Dnd41	blood
18	chr3:60034400-60034800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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