Variant report

Variant	rs57439204
Chromosome Location	chr3:60039408-60039409
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925432	1.00[ASN][1000 genomes]
rs13060068	0.89[ASN][1000 genomes]
rs17061932	0.89[ASN][1000 genomes]
rs17061972	1.00[ASN][1000 genomes]
rs17257269	0.89[ASN][1000 genomes]
rs212036	0.82[ASN][1000 genomes]
rs212038	0.82[ASN][1000 genomes]
rs34732137	0.89[ASN][1000 genomes]
rs3845974	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4024131	0.89[ASN][1000 genomes]
rs4024134	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv876839	chr3:60024084-60039488	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60034600-60044400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:60034800-60041400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60035000-60041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:60035000-60043200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:60035000-60043200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:60035400-60041400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:60036800-60041200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:60037200-60040800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:60037800-60039600	Genic enhancers	Dnd41	blood
10	chr3:60038000-60042800	Enhancers	Thymus	Thymus
11	chr3:60038200-60042800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr3:60038200-60043600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:60038600-60043000	Enhancers	Primary T cells from cord blood	blood
14	chr3:60038800-60039600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:60038800-60041000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:60039000-60039600	Enhancers	NHEK	skin
17	chr3:60039000-60039800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:60039200-60039600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:60039400-60039600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr3:60039400-60041200	Weak transcription	NH-A	brain
21	chr3:60039400-60043200	Enhancers	Fetal Thymus	thymus

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