Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60044792..60047333-chr3:60050018..60052719,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11921963	0.95[EUR][1000 genomes]
rs11925432	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060068	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs17061932	0.89[ASN][1000 genomes]
rs17257269	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs212010	1.00[CHB][hapmap]
rs212036	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs212038	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs2366953	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2630165	1.00[CHB][hapmap]
rs2630182	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2630205	1.00[CHB][hapmap]
rs2736763	1.00[CHB][hapmap]
rs34732137	0.89[ASN][1000 genomes]
rs3845974	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[ASN][1000 genomes]
rs4024131	0.89[ASN][1000 genomes]
rs4024134	0.82[ASN][1000 genomes]
rs4679629	1.00[CHB][hapmap]
rs4679631	1.00[CHB][hapmap]
rs57439204	1.00[ASN][1000 genomes]
rs6446109	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6446110	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6773600	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6782148	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6797474	1.00[CHB][hapmap]
rs7645438	1.00[CEU][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs969562	1.00[CHD][hapmap]
rs986651	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60041000-60049000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:60042000-60051600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60042800-60050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:60043000-60051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:60043600-60047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:60044000-60048200	Genic enhancers	Dnd41	blood
7	chr3:60044800-60050200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:60045000-60054200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:60045600-60050200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:60045800-60052400	Enhancers	Primary T cells from cord blood	blood
11	chr3:60046400-60048200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:60046600-60047200	Enhancers	Fetal Thymus	thymus
13	chr3:60046800-60051800	Enhancers	Thymus	Thymus
14	chr3:60047000-60047200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr3:60047000-60047400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr3:60047000-60047600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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