Variant report

Variant	rs11925432
Chromosome Location	chr3:60049565-60049566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11921963	0.93[EUR][1000 genomes]
rs13060068	0.89[ASN][1000 genomes]
rs17061932	0.89[ASN][1000 genomes]
rs17061972	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257269	0.89[ASN][1000 genomes]
rs212036	0.82[ASN][1000 genomes]
rs212038	0.82[ASN][1000 genomes]
rs34732137	0.89[ASN][1000 genomes]
rs3845974	1.00[ASN][1000 genomes]
rs4024131	0.89[ASN][1000 genomes]
rs4024134	0.82[ASN][1000 genomes]
rs57439204	1.00[ASN][1000 genomes]
rs7645438	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60042000-60051600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:60042800-60050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:60043000-60051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:60044800-60050200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:60045000-60054200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr3:60045600-60050200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:60045800-60052400	Enhancers	Primary T cells from cord blood	blood
8	chr3:60046800-60051800	Enhancers	Thymus	Thymus
9	chr3:60047400-60052200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:60048200-60054000	Enhancers	Dnd41	blood
11	chr3:60048600-60050400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:60048800-60050200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:60048800-60050200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:60048800-60050600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:60048800-60059400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:60049000-60051800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:60049200-60052000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:60049400-60049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:60049400-60049800	Weak transcription	Fetal Thymus	thymus
20	chr3:60049400-60050200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:60049400-60050400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:60049400-60053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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