Variant report

Variant	rs73097336
Chromosome Location	chr5:58751201-58751202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1457110	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16877169	0.83[ASN][1000 genomes]
rs16889878	0.83[ASN][1000 genomes]
rs16889906	0.81[ASN][1000 genomes]
rs16889912	0.81[ASN][1000 genomes]
rs16889913	0.81[ASN][1000 genomes]
rs56261576	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56852282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6450519	0.83[ASN][1000 genomes]
rs6871710	0.83[ASN][1000 genomes]
rs73097314	0.81[AFR][1000 genomes]
rs73097337	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73097371	0.85[AMR][1000 genomes]
rs73758975	0.81[ASN][1000 genomes]
rs73760623	0.81[ASN][1000 genomes]
rs7728853	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7734463	0.81[ASN][1000 genomes]
rs9687424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1028022	chr5:58673780-58786468	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1034656	chr5:58674724-58755580	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv598253	chr5:58675538-58754510	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv881707	chr5:58741491-58784102	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58705600-58751400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:58709800-58756800	Weak transcription	Aorta	Aorta
3	chr5:58716000-58756600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:58731800-58764800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:58735800-58756400	Weak transcription	Psoas Muscle	Psoas
6	chr5:58740400-58751400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:58746000-58754200	Weak transcription	Fetal Brain Female	brain
8	chr5:58748600-58752400	Strong transcription	A549	lung
9	chr5:58750400-58756200	Weak transcription	Fetal Stomach	stomach
10	chr5:58750600-58754800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:58750800-58751400	Enhancers	Liver	Liver
12	chr5:58751000-58751600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:58751000-58752400	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr5:58751200-58751600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links