Variant report

Variant	rs73097348
Chromosome Location	chr5:58762727-58762728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73097352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1028022	chr5:58673780-58786468	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881707	chr5:58741491-58784102	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58731800-58764800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:58753600-58767400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:58754600-58780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58756800-58766800	Weak transcription	Gastric	stomach
5	chr5:58756800-58775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:58756800-58775600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:58759600-58768000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:58761200-58763200	Genic enhancers	A549	lung
9	chr5:58761200-58763800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:58761200-58765400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:58761600-58763400	Enhancers	Liver	Liver
12	chr5:58761800-58762800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:58761800-58763400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr5:58762000-58763400	Enhancers	Fetal Brain Female	brain
15	chr5:58762000-58778800	Weak transcription	Aorta	Aorta
16	chr5:58762200-58762800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:58762200-58762800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:58762200-58762800	Genic enhancers	Psoas Muscle	Psoas
19	chr5:58762200-58763600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:58762200-58766000	Enhancers	Fetal Brain Male	brain
21	chr5:58762400-58762800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:58762400-58763000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:58762400-58763000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:58762400-58763200	Enhancers	Fetal Intestine Small	intestine
25	chr5:58762600-58763000	Enhancers	Fetal Intestine Large	intestine
26	chr5:58762600-58764800	Enhancers	Brain Germinal Matrix	brain
27	chr5:58762600-58780600	Weak transcription	Fetal Lung	lung

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