Variant report

Variant	rs73099003
Chromosome Location	chr5:57559565-57559566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16887978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887987	0.87[AFR][1000 genomes]
rs61413389	0.87[AFR][1000 genomes]
rs73100805	0.87[AFR][1000 genomes]
rs73100820	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57556400-57561200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:57557800-57560200	Weak transcription	Right Atrium	heart
3	chr5:57557800-57562200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:57557800-57562200	Weak transcription	HUVEC	blood vessel
5	chr5:57558200-57560200	Weak transcription	Adipose Nuclei	Adipose
6	chr5:57558200-57561400	Weak transcription	A549	lung
7	chr5:57558800-57560800	Weak transcription	NHLF	lung
8	chr5:57558800-57561200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57559000-57563600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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