Variant report

Variant	rs61413389
Chromosome Location	chr5:57550548-57550549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16887978	0.90[AFR][1000 genomes]
rs16887987	0.81[AFR][1000 genomes]
rs73099003	0.87[AFR][1000 genomes]
rs73100805	0.81[AFR][1000 genomes]
rs73100820	0.86[AFR][1000 genomes]
rs73100830	0.85[AFR][1000 genomes]
rs73100833	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
2	chr5:57543000-57555600	Weak transcription	Right Atrium	heart
3	chr5:57543200-57552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:57547200-57554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:57549200-57554600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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