Variant report

Variant	rs73100830
Chromosome Location	chr5:57595777-57595778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16887978	0.82[AFR][1000 genomes]
rs16887987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899282	1.00[AMR][1000 genomes]
rs57114973	1.00[AMR][1000 genomes]
rs57170928	1.00[AMR][1000 genomes]
rs58019677	1.00[AMR][1000 genomes]
rs58436655	1.00[AMR][1000 genomes]
rs59106045	1.00[AMR][1000 genomes]
rs60208894	1.00[AMR][1000 genomes]
rs60258451	1.00[AMR][1000 genomes]
rs61258472	1.00[AMR][1000 genomes]
rs61413389	0.85[AFR][1000 genomes]
rs61536695	1.00[AMR][1000 genomes]
rs73100805	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100846	1.00[AMR][1000 genomes]
rs73100850	1.00[AMR][1000 genomes]
rs7702390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57591400-57596400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:57595200-57596000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:57595200-57596400	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links