Variant report

Variant	rs3899282
Chromosome Location	chr5:57693982-57693983
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16887987	1.00[AMR][1000 genomes]
rs57114973	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170928	1.00[AMR][1000 genomes]
rs58019677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58436655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106045	1.00[AMR][1000 genomes]
rs59918357	1.00[AMR][1000 genomes]
rs60208894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60258451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60939080	1.00[AMR][1000 genomes]
rs61258472	1.00[AMR][1000 genomes]
rs61536695	1.00[AMR][1000 genomes]
rs73100805	1.00[AMR][1000 genomes]
rs73100820	1.00[AMR][1000 genomes]
rs73100830	1.00[AMR][1000 genomes]
rs73100833	1.00[AMR][1000 genomes]
rs73100846	1.00[AMR][1000 genomes]
rs73100850	1.00[AMR][1000 genomes]
rs7702390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57690800-57694400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links