Variant report

Variant	rs57170928
Chromosome Location	chr5:57651214-57651215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16887987	1.00[AMR][1000 genomes]
rs3899282	1.00[AMR][1000 genomes]
rs57114973	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58019677	1.00[AMR][1000 genomes]
rs58436655	1.00[AMR][1000 genomes]
rs59106045	1.00[AMR][1000 genomes]
rs59918357	1.00[AMR][1000 genomes]
rs60208894	1.00[AMR][1000 genomes]
rs60258451	1.00[AMR][1000 genomes]
rs60939080	1.00[AMR][1000 genomes]
rs61258472	1.00[AMR][1000 genomes]
rs61536695	1.00[AMR][1000 genomes]
rs73100805	1.00[AMR][1000 genomes]
rs73100820	1.00[AMR][1000 genomes]
rs73100830	1.00[AMR][1000 genomes]
rs73100833	1.00[AMR][1000 genomes]
rs73100846	1.00[AMR][1000 genomes]
rs73100850	1.00[AMR][1000 genomes]
rs7702390	1.00[AMR][1000 genomes]
rs7737200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57649400-57655000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57650200-57655600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57650200-57655800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:57650400-57655800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:57650400-57656000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:57651200-57651400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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