Variant report
Variant | rs73100235 |
---|---|
Chromosome Location | chr20:15533759-15533760 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ZNF274 | chr20:15533081-15534073 | H1-hESC | embryonic stem cell: | n/a | n/a |
2 | E2F4 | chr20:15533712-15533763 | MCF10A-Er-Src | breast: | n/a | n/a |
3 | ZNF274 | chr20:15533223-15533766 | K562 | blood: | n/a | n/a |
4 | ZNF274 | chr20:15533028-15534561 | GM08714 | blood: | n/a | n/a |
5 | ZNF274 | chr20:15533075-15534065 | NT2-D1 | testis: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000225181 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11697986 | 0.97[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs1362513 | 0.85[AFR][1000 genomes] |
rs16995992 | 0.85[EUR][1000 genomes] |
rs6105432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6110655 | 0.83[EUR][1000 genomes] |
rs6110672 | 0.96[AMR][1000 genomes] |
rs73098211 | 0.92[EUR][1000 genomes] |
rs73098214 | 0.97[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rs73100236 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes] |
rs73100255 | 0.85[EUR][1000 genomes] |
rs73100257 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15533400-15541600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |