Variant report
| Variant | rs73100313 |
|---|---|
| Chromosome Location | chr4:18625222-18625223 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:18623244..18625246-chr4:18636113..18638768,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs59154793 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098376 | 1.00[AMR][1000 genomes] |
| rs73098378 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098385 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098388 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098389 | 1.00[AMR][1000 genomes] |
| rs73098400 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098402 | 1.00[AFR][1000 genomes] |
| rs73100316 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73100322 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73100328 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73100391 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73100392 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73100398 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73102316 | 0.88[AFR][1000 genomes] |
| rs73102348 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv532708 | chr4:18596861-19176896 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:18625200-18626000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
