Variant report

Variant	rs73102348
Chromosome Location	chr4:18665622-18665623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59154793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66818344	0.86[AFR][1000 genomes]
rs73098376	1.00[AMR][1000 genomes]
rs73098378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098385	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098388	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098389	1.00[AMR][1000 genomes]
rs73098400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098402	0.93[AFR][1000 genomes]
rs73100313	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100316	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102316	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18664800-18665800	Weak transcription	Brain Substantia Nigra	brain
2	chr4:18665400-18666400	Enhancers	Brain Hippocampus Middle	brain
3	chr4:18665600-18665800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:18665600-18665800	Active TSS	Brain Cingulate Gyrus	brain
5	chr4:18665600-18666200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:18665600-18666200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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