Variant report

Variant	rs73100917
Chromosome Location	chr5:57336925-57336926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57316222..57318915-chr5:57334723..57336963,2	MCF-7	breast:
2	chr5:57321582..57323456-chr5:57334813..57337074,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10077767	1.00[ASN][1000 genomes]
rs2101525	1.00[AMR][1000 genomes]
rs73100909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700913	1.00[ASN][1000 genomes]
rs7731553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1015769	chr5:57309031-57338357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3434910	chr5:57317244-57340175	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv272	chr5:57320938-57339546	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv1017266	chr5:57321586-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv1031966	chr5:57321586-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	nsv1033414	chr5:57321646-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv1023958	chr5:57321646-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv1796448	chr5:57323612-57338885	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv1803353	chr5:57323612-57338885	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv1031755	chr5:57326015-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv1018137	chr5:57326015-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	nsv1022023	chr5:57326015-57341014	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv1031567	chr5:57326015-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv1033110	chr5:57326015-57342120	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	esv1792664	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	nsv1020020	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv1827516	chr5:57326027-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	nsv1028094	chr5:57326151-57338357	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
29	nsv1034592	chr5:57326151-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	nsv1021126	chr5:57326151-57341144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	nsv1026096	chr5:57326268-57338357	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
32	nsv598235	chr5:57326833-57340902	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
33	nsv598236	chr5:57326833-57343495	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	esv1827589	chr5:57326833-57345166	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	esv1846174	chr5:57326833-57345166	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv1020073	chr5:57329103-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
37	nsv1024132	chr5:57329103-57341144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
38	nsv1016751	chr5:57329518-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
39	nsv1019431	chr5:57329744-57340073	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
40	nsv1017677	chr5:57329744-57342152	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
41	nsv1023356	chr5:57329835-57341014	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
42	nsv1035077	chr5:57329835-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
43	nsv1023875	chr5:57329887-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57332600-57338200	Weak transcription	Stomach Mucosa	stomach
2	chr5:57335200-57339000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:57335800-57337000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:57335800-57337000	Enhancers	NHDF-Ad	bronchial
5	chr5:57335800-57337200	Enhancers	HSMM	muscle
6	chr5:57335800-57337400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:57336000-57337000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:57336000-57337000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:57336000-57337000	Enhancers	Hela-S3	cervix
10	chr5:57336000-57337000	Enhancers	NH-A	brain
11	chr5:57336000-57337200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57336000-57337200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:57336000-57337200	Weak transcription	K562	blood
14	chr5:57336200-57338800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:57336600-57338800	Weak transcription	Osteobl	bone
16	chr5:57336800-57338200	Weak transcription	HMEC	breast
17	chr5:57336800-57338600	Weak transcription	NHEK	skin

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