Variant report

Variant	rs73100922
Chromosome Location	chr5:57339005-57339006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57338299..57341350-chr5:57344603..57346493,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10077767	1.00[ASN][1000 genomes]
rs2101525	1.00[AMR][1000 genomes]
rs73100909	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100912	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73100917	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700913	1.00[ASN][1000 genomes]
rs7731553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3434910	chr5:57317244-57340175	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv272	chr5:57320938-57339546	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv1017266	chr5:57321586-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv1031966	chr5:57321586-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv1023958	chr5:57321646-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	nsv1018137	chr5:57326015-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv1022023	chr5:57326015-57341014	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv1031567	chr5:57326015-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv1033110	chr5:57326015-57342120	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv1792664	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv1020020	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv1827516	chr5:57326027-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv1034592	chr5:57326151-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv1021126	chr5:57326151-57341144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	nsv598235	chr5:57326833-57340902	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	nsv598236	chr5:57326833-57343495	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv1827589	chr5:57326833-57345166	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv1846174	chr5:57326833-57345166	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv1020073	chr5:57329103-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	nsv1024132	chr5:57329103-57341144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	nsv1016751	chr5:57329518-57340073	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
32	nsv1019431	chr5:57329744-57340073	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
33	nsv1017677	chr5:57329744-57342152	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	nsv1023356	chr5:57329835-57341014	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
35	nsv1035077	chr5:57329835-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
36	nsv1023875	chr5:57329887-57341144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57337200-57340400	Enhancers	K562	blood
2	chr5:57337400-57339200	Enhancers	Dnd41	blood
3	chr5:57338200-57339400	Enhancers	HMEC	breast
4	chr5:57338200-57339800	Enhancers	Stomach Mucosa	stomach
5	chr5:57338600-57339200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57338600-57339400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:57338600-57339400	Enhancers	NHEK	skin
8	chr5:57338600-57339600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:57338600-57339800	Enhancers	Hela-S3	cervix
10	chr5:57338800-57339200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:57338800-57339200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:57338800-57339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:57338800-57339200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr5:57338800-57339400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:57338800-57339400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:57338800-57339400	Enhancers	Osteobl	bone
17	chr5:57338800-57339600	Enhancers	Brain Angular Gyrus	brain
18	chr5:57338800-57340200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:57339000-57339200	Enhancers	HSMM	muscle
20	chr5:57339000-57339400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:57339000-57339400	Enhancers	A549	lung

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