Variant report

Variant	rs73101419
Chromosome Location	chr20:24778847-24778848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24778826..24780956-chr20:24782590..24785406,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1000042	1.00[ASN][1000 genomes]
rs1000044	1.00[ASN][1000 genomes]
rs13044709	1.00[ASN][1000 genomes]
rs13045011	1.00[ASN][1000 genomes]
rs1998153	1.00[ASN][1000 genomes]
rs1998154	1.00[ASN][1000 genomes]
rs1998155	1.00[ASN][1000 genomes]
rs226682	1.00[ASN][1000 genomes]
rs226683	1.00[ASN][1000 genomes]
rs226684	1.00[ASN][1000 genomes]
rs226692	1.00[ASN][1000 genomes]
rs226693	1.00[ASN][1000 genomes]
rs226694	1.00[ASN][1000 genomes]
rs226695	1.00[ASN][1000 genomes]
rs226696	1.00[ASN][1000 genomes]
rs226700	1.00[ASN][1000 genomes]
rs226701	1.00[ASN][1000 genomes]
rs2424681	1.00[ASN][1000 genomes]
rs2424682	1.00[ASN][1000 genomes]
rs2424683	1.00[ASN][1000 genomes]
rs2424684	1.00[ASN][1000 genomes]
rs2424685	1.00[ASN][1000 genomes]
rs2424686	1.00[ASN][1000 genomes]
rs2892219	1.00[ASN][1000 genomes]
rs4813536	1.00[ASN][1000 genomes]
rs4813537	1.00[ASN][1000 genomes]
rs4815309	1.00[ASN][1000 genomes]
rs4815311	1.00[ASN][1000 genomes]
rs6036905	1.00[ASN][1000 genomes]
rs6036907	1.00[ASN][1000 genomes]
rs6049963	1.00[ASN][1000 genomes]
rs6049964	1.00[ASN][1000 genomes]
rs6049967	1.00[ASN][1000 genomes]
rs6049968	1.00[ASN][1000 genomes]
rs6049970	1.00[ASN][1000 genomes]
rs6083615	1.00[ASN][1000 genomes]
rs6083616	1.00[ASN][1000 genomes]
rs6083617	1.00[ASN][1000 genomes]
rs6106946	1.00[ASN][1000 genomes]
rs6132763	1.00[ASN][1000 genomes]
rs6132764	1.00[ASN][1000 genomes]
rs6138371	1.00[ASN][1000 genomes]
rs6138372	1.00[ASN][1000 genomes]
rs6515532	1.00[ASN][1000 genomes]
rs732829	1.00[ASN][1000 genomes]
rs73329	1.00[ASN][1000 genomes]
rs85805	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24774000-24783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24776400-24779000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:24776600-24779200	Weak transcription	HSMM	muscle
4	chr20:24776800-24779200	Weak transcription	HSMMtube	muscle
5	chr20:24777200-24791400	Weak transcription	Spleen	Spleen
6	chr20:24778600-24781000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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