Variant report

Variant	rs73102939
Chromosome Location	chr5:57637089-57637090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16888029	0.81[AFR][1000 genomes]
rs56680593	0.93[AFR][1000 genomes]
rs73086757	0.81[AFR][1000 genomes]
rs73086763	0.93[AFR][1000 genomes]
rs73086771	0.93[AFR][1000 genomes]
rs73086774	0.93[AFR][1000 genomes]
rs73088673	0.86[AFR][1000 genomes]
rs73088674	0.81[AFR][1000 genomes]
rs73090687	0.93[AFR][1000 genomes]
rs73090693	0.86[AFR][1000 genomes]
rs73102940	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57635600-57637400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:57636800-57637200	Enhancers	Adipose Nuclei	Adipose
4	chr5:57637000-57642200	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links