Variant report

Variant	rs73086763
Chromosome Location	chr5:57662055-57662056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56680593	0.86[AFR][1000 genomes]
rs73086757	0.87[AFR][1000 genomes]
rs73086771	1.00[AFR][1000 genomes]
rs73086774	1.00[AFR][1000 genomes]
rs73088673	0.93[AFR][1000 genomes]
rs73088674	0.87[AFR][1000 genomes]
rs73090687	1.00[AFR][1000 genomes]
rs73090693	0.93[AFR][1000 genomes]
rs73102939	0.93[AFR][1000 genomes]
rs73102940	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv980973	chr5:57659530-57662502	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57658800-57662400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:57661600-57664000	Enhancers	Fetal Heart	heart
3	chr5:57661800-57662600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:57661800-57662600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr5:57661800-57663000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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