Variant report

Variant	rs73103010
Chromosome Location	chr1:220511124-220511125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220503462..220505914-chr1:220509183..220511550,3	MCF-7	breast:
2	chr1:220505070..220506632-chr1:220508867..220511309,2	MCF-7	breast:
3	chr1:220510796..220512747-chr1:220514386..220517279,2	MCF-7	breast:
4	chr1:220509893..220511570-chr1:220536050..220537771,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12080669	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17641611	0.87[AFR][1000 genomes]
rs55874043	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55922019	0.87[AFR][1000 genomes]
rs56172126	0.87[AFR][1000 genomes]
rs56365157	0.81[AFR][1000 genomes]
rs60326603	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67560028	0.87[AFR][1000 genomes]
rs73092160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73095644	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73101290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102536	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73103020	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103022	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73103033	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73104956	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7550884	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220508600-220511400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:220508800-220511400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:220508800-220511400	Enhancers	HMEC	breast
4	chr1:220509000-220511200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:220509200-220511400	Enhancers	NHEK	skin
6	chr1:220509400-220512000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:220509400-220512000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:220509600-220512000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:220509600-220512000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:220509600-220512000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:220509800-220511400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:220510000-220513200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:220510400-220511200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:220510400-220511400	Enhancers	Placenta	Placenta
15	chr1:220510600-220511200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr1:220510600-220511400	Enhancers	Hela-S3	cervix
17	chr1:220510600-220513200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:220510800-220511200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:220510800-220511200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:220510800-220511200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:220510800-220511200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:220510800-220511200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:220510800-220511200	Enhancers	Esophagus	oesophagus
24	chr1:220510800-220511200	Enhancers	GM12878-XiMat	blood
25	chr1:220510800-220511400	Enhancers	Fetal Kidney	kidney
26	chr1:220510800-220525600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:220511000-220511200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr1:220511000-220511200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr1:220511000-220511200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links