Variant report

Variant	rs73095644
Chromosome Location	chr1:220457673-220457674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12080669	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55874043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60326603	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73092160	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73101290	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73102536	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73103010	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73103020	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73103022	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73103033	0.81[AMR][1000 genomes]
rs73104956	0.81[AMR][1000 genomes]
rs7526504	1.00[ASN][1000 genomes]
rs7550884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220457600-220463600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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