Variant report

Variant	rs7526504
Chromosome Location	chr1:220463591-220463592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55874043	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73095644	1.00[ASN][1000 genomes]
rs7550884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220457600-220463600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:220462600-220464600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:220463000-220463600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:220463400-220463800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr1:220463400-220463800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:220463400-220464000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:220463400-220464000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr1:220463400-220464200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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