Variant report

Variant	rs73106648
Chromosome Location	chr1:221737817-221737818
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221732770..221734353-chr1:221737338..221739600,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10495165	0.89[ASN][1000 genomes]
rs10495166	0.89[ASN][1000 genomes]
rs10495167	0.89[ASN][1000 genomes]
rs10495168	0.89[ASN][1000 genomes]
rs12021952	0.89[ASN][1000 genomes]
rs12401875	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403055	0.89[ASN][1000 genomes]
rs12404274	0.83[ASN][1000 genomes]
rs12405504	0.89[ASN][1000 genomes]
rs12409206	0.83[ASN][1000 genomes]
rs12409984	0.89[ASN][1000 genomes]
rs12410562	0.89[ASN][1000 genomes]
rs12411238	0.83[ASN][1000 genomes]
rs17010272	1.00[ASN][1000 genomes]
rs17010290	1.00[ASN][1000 genomes]
rs17010309	1.00[ASN][1000 genomes]
rs17041848	1.00[ASN][1000 genomes]
rs17041852	1.00[ASN][1000 genomes]
rs17041853	1.00[ASN][1000 genomes]
rs17661530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35827283	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58002157	0.89[ASN][1000 genomes]
rs58467896	0.89[ASN][1000 genomes]
rs58516053	0.89[ASN][1000 genomes]
rs58659812	0.89[ASN][1000 genomes]
rs58696164	0.89[ASN][1000 genomes]
rs60805607	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61372671	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73106612	0.89[ASN][1000 genomes]
rs73106614	0.89[ASN][1000 genomes]
rs73106616	0.89[ASN][1000 genomes]
rs73106619	0.89[ASN][1000 genomes]
rs73106624	0.89[ASN][1000 genomes]
rs73106631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106634	1.00[ASN][1000 genomes]
rs73116215	0.83[ASN][1000 genomes]
rs73116221	0.83[ASN][1000 genomes]
rs73117996	0.83[ASN][1000 genomes]
rs73117998	0.83[ASN][1000 genomes]
rs73118002	0.83[ASN][1000 genomes]
rs73119903	0.83[ASN][1000 genomes]
rs73119910	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73119916	0.89[ASN][1000 genomes]
rs73119926	0.89[ASN][1000 genomes]
rs73119928	0.89[ASN][1000 genomes]
rs73119929	0.89[ASN][1000 genomes]
rs73119932	0.89[ASN][1000 genomes]
rs73119935	0.89[ASN][1000 genomes]
rs73119938	0.89[ASN][1000 genomes]
rs73119939	0.89[ASN][1000 genomes]
rs73119945	0.89[ASN][1000 genomes]
rs73119947	0.89[ASN][1000 genomes]
rs73119948	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1009838	chr1:221692621-221773945	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535301	chr1:221692621-221773945	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221729800-221748600	Weak transcription	Left Ventricle	heart
2	chr1:221729800-221748800	Weak transcription	Pancreas	Pancrea
3	chr1:221737000-221741200	Weak transcription	Psoas Muscle	Psoas
4	chr1:221737000-221741600	Enhancers	Fetal Heart	heart
5	chr1:221737200-221741200	Weak transcription	Ovary	ovary
6	chr1:221737200-221741200	Weak transcription	Right Atrium	heart
7	chr1:221737200-221741600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:221737400-221738800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:221737400-221740600	Weak transcription	Liver	Liver

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