Variant report

Variant	rs73119910
Chromosome Location	chr1:221724300-221724301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10495165	1.00[ASN][1000 genomes]
rs10495166	1.00[ASN][1000 genomes]
rs10495167	1.00[ASN][1000 genomes]
rs10495168	1.00[ASN][1000 genomes]
rs12401875	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12403055	1.00[ASN][1000 genomes]
rs12404274	0.94[ASN][1000 genomes]
rs12405504	1.00[ASN][1000 genomes]
rs12409206	0.94[ASN][1000 genomes]
rs12410562	1.00[ASN][1000 genomes]
rs12411238	0.94[ASN][1000 genomes]
rs17010272	0.89[ASN][1000 genomes]
rs17010290	0.89[ASN][1000 genomes]
rs17010309	0.89[ASN][1000 genomes]
rs17041848	0.89[ASN][1000 genomes]
rs17041852	0.89[ASN][1000 genomes]
rs17041853	0.89[ASN][1000 genomes]
rs17661530	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35827283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58002157	1.00[ASN][1000 genomes]
rs58467896	1.00[ASN][1000 genomes]
rs58516053	1.00[ASN][1000 genomes]
rs58659812	1.00[ASN][1000 genomes]
rs58696164	1.00[ASN][1000 genomes]
rs60805607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61372671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73106612	1.00[ASN][1000 genomes]
rs73106614	1.00[ASN][1000 genomes]
rs73106616	1.00[ASN][1000 genomes]
rs73106619	1.00[ASN][1000 genomes]
rs73106624	1.00[ASN][1000 genomes]
rs73106631	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73106634	0.89[ASN][1000 genomes]
rs73106648	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73116215	0.94[ASN][1000 genomes]
rs73116221	0.94[ASN][1000 genomes]
rs73117996	0.94[ASN][1000 genomes]
rs73117998	0.94[ASN][1000 genomes]
rs73118002	0.94[ASN][1000 genomes]
rs73119903	0.94[ASN][1000 genomes]
rs73119916	1.00[ASN][1000 genomes]
rs73119926	1.00[ASN][1000 genomes]
rs73119928	1.00[ASN][1000 genomes]
rs73119929	1.00[ASN][1000 genomes]
rs73119932	1.00[ASN][1000 genomes]
rs73119935	1.00[ASN][1000 genomes]
rs73119938	1.00[ASN][1000 genomes]
rs73119939	1.00[ASN][1000 genomes]
rs73119945	1.00[ASN][1000 genomes]
rs73119947	1.00[ASN][1000 genomes]
rs73119948	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1009838	chr1:221692621-221773945	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535301	chr1:221692621-221773945	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221722200-221724400	Enhancers	Pancreas	Pancrea
2	chr1:221723600-221728600	Weak transcription	Fetal Heart	heart
3	chr1:221724000-221729200	Weak transcription	Left Ventricle	heart

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