Variant report

Variant	rs73107107
Chromosome Location	chr2:233847951-233847952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:233846197..233848813-chr2:234119067..234120621,2	MCF-7	breast:
2	chr2:233844256..233847061-chr2:233847488..233849167,2	MCF-7	breast:
3	chr2:233847513..233848181-chr2:234159781..234160292,2	MCF-7	breast:
4	chr2:233846572..233848213-chr2:233851223..233853208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28631381	1.00[AMR][1000 genomes]
rs58480585	1.00[AMR][1000 genomes]
rs61351720	1.00[AMR][1000 genomes]
rs61750834	1.00[AMR][1000 genomes]
rs6712466	1.00[AMR][1000 genomes]
rs73094939	1.00[AMR][1000 genomes]
rs73094949	1.00[AMR][1000 genomes]
rs73094951	1.00[AMR][1000 genomes]
rs73094978	1.00[AMR][1000 genomes]
rs73094980	1.00[AMR][1000 genomes]
rs73094987	1.00[AMR][1000 genomes]
rs73102287	1.00[AMR][1000 genomes]
rs73102744	1.00[AMR][1000 genomes]
rs73106309	1.00[AMR][1000 genomes]
rs73108323	1.00[AMR][1000 genomes]
rs73108335	1.00[AMR][1000 genomes]
rs73108362	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv876011	chr2:233809244-233912755	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233823200-233852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:233838400-233850800	Weak transcription	Right Atrium	heart
3	chr2:233839600-233853000	Weak transcription	Liver	Liver
4	chr2:233841800-233849400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:233843600-233852600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:233843800-233848200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:233844600-233849000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr2:233844800-233848000	Enhancers	Esophagus	oesophagus
9	chr2:233845800-233848800	Enhancers	A549	lung
10	chr2:233846200-233848000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:233846600-233848400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:233846800-233852200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:233846800-233852200	Weak transcription	Colonic Mucosa	Colon
14	chr2:233846800-233852200	Weak transcription	HMEC	breast
15	chr2:233846800-233853000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:233847000-233848000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:233847000-233848000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:233847000-233848200	Strong transcription	Fetal Intestine Small	intestine
19	chr2:233847000-233852200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:233847000-233852400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr2:233847200-233848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:233847200-233852000	Weak transcription	Stomach Mucosa	stomach
23	chr2:233847200-233852200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:233847200-233852400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:233847600-233848400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr2:233847600-233848600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:233847600-233848600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:233847600-233848800	Enhancers	H9 Cell Line	embryonic stem cell
29	chr2:233847600-233849400	Strong transcription	HepG2	liver
30	chr2:233847800-233848400	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links