Variant report

Variant	rs73107682
Chromosome Location	chr1:220853705-220853706
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11553965	0.97[EUR][1000 genomes]
rs11553966	0.94[EUR][1000 genomes]
rs17008339	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2088044	0.82[EUR][1000 genomes]
rs2101771	0.82[EUR][1000 genomes]
rs3738175	0.94[EUR][1000 genomes]
rs58055537	0.85[EUR][1000 genomes]
rs6673650	0.85[EUR][1000 genomes]
rs7533858	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468194	chr1:220845610-220885612	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv549227	chr1:220845610-220885612	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv945302	chr1:220851349-220854713	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220853600-220853800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr1:220853600-220853800	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr1:220853600-220854000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:220853600-220854000	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:220853600-220854400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:220853600-220854400	Enhancers	Hela-S3	cervix
7	chr1:220853600-220854600	Enhancers	Liver	Liver
8	chr1:220853600-220854600	Enhancers	Pancreas	Pancrea
9	chr1:220853600-220854800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:220853600-220854800	Enhancers	Adipose Nuclei	Adipose
11	chr1:220853600-220854800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:220853600-220854800	Enhancers	Stomach Mucosa	stomach
13	chr1:220853600-220854800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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