Variant report

Variant	rs73108306
Chromosome Location	chr20:16227997-16227998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56223133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56403879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60570311	1.00[EUR][1000 genomes]
rs67375692	1.00[EUR][1000 genomes]
rs7265103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104280	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104292	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73104300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106376	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16222800-16229000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr20:16225800-16228600	Enhancers	Ovary	ovary
3	chr20:16227400-16228000	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links