Variant report

Variant	rs73112960
Chromosome Location	chr5:68291779-68291780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4458534	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73112962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73112966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73112978	1.00[AMR][1000 genomes]
rs73112982	1.00[AMR][1000 genomes]
rs73124953	1.00[AMR][1000 genomes]
rs73124980	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73124990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73124993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1001926	chr5:68281457-68292160	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68290200-68292000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:68290400-68292000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:68290400-68292000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:68290400-68292200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:68290600-68292200	Enhancers	HMEC	breast
6	chr5:68290800-68291800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:68290800-68292000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:68290800-68292200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:68290800-68292200	Enhancers	NHEK	skin
10	chr5:68291000-68291800	Enhancers	GM12878-XiMat	blood
11	chr5:68291600-68292200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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