Variant report

Variant	rs73113385
Chromosome Location	chr4:26331616-26331617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26331564..26332538-chr4:26411916..26412968,7	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56714342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57976445	1.00[AMR][1000 genomes]
rs59188746	1.00[AMR][1000 genomes]
rs61575372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61701005	1.00[AMR][1000 genomes]
rs6857982	0.84[AFR][1000 genomes]
rs73113380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73810920	1.00[AMR][1000 genomes]
rs7658847	1.00[AMR][1000 genomes]
rs7684740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26332600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:26323800-26333000	Weak transcription	Small Intestine	intestine
3	chr4:26323800-26374400	Weak transcription	Lung	lung
4	chr4:26324000-26332600	Weak transcription	Left Ventricle	heart
5	chr4:26324000-26332600	Weak transcription	Psoas Muscle	Psoas
6	chr4:26324000-26332800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:26324000-26332800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:26324000-26332800	Weak transcription	Pancreas	Pancrea
9	chr4:26324000-26332800	Weak transcription	Spleen	Spleen
10	chr4:26324200-26332600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:26324200-26332800	Weak transcription	Right Ventricle	heart
12	chr4:26324400-26332200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:26324400-26332200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:26324600-26333200	Weak transcription	Thymus	Thymus
15	chr4:26324800-26332000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:26325000-26334200	Weak transcription	Fetal Intestine Small	intestine
17	chr4:26325000-26338000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
19	chr4:26325400-26332600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:26325600-26332000	Weak transcription	Brain Germinal Matrix	brain
21	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
22	chr4:26325800-26331800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:26325800-26332000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:26325800-26332000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:26325800-26332000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:26325800-26333200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
28	chr4:26326000-26332200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:26326000-26332200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:26326000-26332200	Weak transcription	Liver	Liver
31	chr4:26326000-26332200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:26326000-26341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:26326400-26332200	Weak transcription	Fetal Brain Male	brain
35	chr4:26326400-26332600	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:26326600-26339600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:26326800-26332000	Weak transcription	HepG2	liver
38	chr4:26326800-26332200	Weak transcription	Adipose Nuclei	Adipose
39	chr4:26327000-26332200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:26327200-26331800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:26327200-26331800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr4:26327200-26332000	Weak transcription	Brain Angular Gyrus	brain
43	chr4:26327200-26332200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:26327200-26332200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:26327200-26332200	Weak transcription	Fetal Brain Female	brain
46	chr4:26327200-26332200	Weak transcription	K562	blood
47	chr4:26327400-26331800	Weak transcription	Brain Hippocampus Middle	brain
48	chr4:26327400-26332000	Weak transcription	Fetal Lung	lung
49	chr4:26327400-26332200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr4:26327400-26332200	Weak transcription	Stomach Mucosa	stomach

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