Variant report

Variant	rs61575372
Chromosome Location	chr4:26335590-26335591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:25988352..25991157-chr4:26335027..26336628,2	MCF-7	breast:
2	chr4:26331672..26333211-chr4:26335097..26337587,2	K562	blood:
3	chr4:26334111..26335661-chr4:26342183..26344127,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56714342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57976445	1.00[AMR][1000 genomes]
rs59188746	1.00[AMR][1000 genomes]
rs61701005	1.00[AMR][1000 genomes]
rs6827673	0.82[AFR][1000 genomes]
rs6832661	0.82[AFR][1000 genomes]
rs6857982	0.86[AFR][1000 genomes]
rs73113380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113399	0.82[AFR][1000 genomes]
rs73113402	0.82[AFR][1000 genomes]
rs73810920	1.00[AMR][1000 genomes]
rs7658847	1.00[AMR][1000 genomes]
rs7661241	0.82[AFR][1000 genomes]
rs7684740	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26338000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
5	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
6	chr4:26326000-26341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:26326600-26339600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:26328800-26343600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:26329000-26341800	Weak transcription	GM12878-XiMat	blood
11	chr4:26329000-26343200	Weak transcription	HMEC	breast
12	chr4:26329000-26343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:26329400-26342800	Weak transcription	NHEK	skin
14	chr4:26330600-26342600	Weak transcription	NHLF	lung
15	chr4:26332400-26338000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:26332400-26343600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:26332600-26342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:26332600-26343800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:26332800-26335800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:26333000-26335800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:26333000-26336000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:26333000-26341000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:26333000-26341400	Weak transcription	Placenta	Placenta
24	chr4:26333000-26341800	Weak transcription	HSMM	muscle
25	chr4:26333000-26343200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:26333000-26343600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:26333000-26343600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:26333000-26343600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:26333000-26343600	Weak transcription	Fetal Brain Female	brain
30	chr4:26333200-26335800	Weak transcription	NH-A	brain
31	chr4:26333400-26335600	Weak transcription	Psoas Muscle	Psoas
32	chr4:26333400-26335800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr4:26333400-26336000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:26333400-26336000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:26333400-26336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:26333400-26338600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:26333400-26338600	Weak transcription	Thymus	Thymus
38	chr4:26333400-26338800	Weak transcription	Fetal Thymus	thymus
39	chr4:26333400-26340600	Weak transcription	Ovary	ovary
40	chr4:26333400-26341800	Weak transcription	Spleen	Spleen
41	chr4:26333400-26342800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:26333400-26342800	Weak transcription	Right Atrium	heart
43	chr4:26333400-26343000	Weak transcription	Pancreas	Pancrea
44	chr4:26333400-26343400	Weak transcription	Aorta	Aorta
45	chr4:26333400-26343600	Weak transcription	Fetal Muscle Leg	muscle
46	chr4:26333400-26343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr4:26333600-26335600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:26333600-26338200	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr4:26333600-26338600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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