Variant report

Variant	rs7661241
Chromosome Location	chr4:26346972-26346973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26346736..26349677-chr4:26349705..26351500,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56714342	0.82[AFR][1000 genomes]
rs56928218	1.00[AMR][1000 genomes]
rs57991198	1.00[AMR][1000 genomes]
rs60621333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61575372	0.82[AFR][1000 genomes]
rs61577242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6857982	1.00[AMR][1000 genomes]
rs73113388	0.82[AFR][1000 genomes]
rs73113399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121181	1.00[AMR][1000 genomes]
rs73121192	1.00[AMR][1000 genomes]
rs73121199	1.00[AMR][1000 genomes]
rs73121200	1.00[AMR][1000 genomes]
rs73121201	1.00[AMR][1000 genomes]
rs7655406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669128	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7669953	1.00[AMR][1000 genomes]
rs7677580	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682946	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26342000-26350400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:26342400-26347600	Enhancers	HSMM	muscle
7	chr4:26343000-26348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:26343200-26347000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:26343200-26347400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:26343600-26357200	Weak transcription	Gastric	stomach
12	chr4:26343800-26347800	Weak transcription	Left Ventricle	heart
13	chr4:26343800-26349000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:26344000-26347200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:26344200-26347000	Weak transcription	Stomach Mucosa	stomach
16	chr4:26344200-26347200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:26344200-26347200	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:26344200-26347200	Weak transcription	Right Atrium	heart
19	chr4:26344200-26348000	Weak transcription	Ovary	ovary
20	chr4:26344200-26350200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:26344200-26350600	Weak transcription	Pancreas	Pancrea
22	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
26	chr4:26344400-26347000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:26344400-26352200	Weak transcription	Primary T cells from cord blood	blood
28	chr4:26344400-26353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:26344600-26347200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:26344800-26347000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:26344800-26347000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:26344800-26347000	Weak transcription	K562	blood
34	chr4:26344800-26347200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:26344800-26347400	Enhancers	NHLF	lung
36	chr4:26344800-26350600	Weak transcription	Right Ventricle	heart
37	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
38	chr4:26345000-26347000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:26345000-26347200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:26345000-26347200	Weak transcription	Fetal Kidney	kidney
41	chr4:26345000-26347400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:26345000-26347400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:26345000-26348200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:26345000-26357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr4:26345200-26347000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:26345200-26347200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr4:26345200-26347200	Weak transcription	NH-A	brain
48	chr4:26345200-26348800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:26345400-26347000	Enhancers	Brain Anterior Caudate	brain

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