Variant report

Variant	rs73114767
Chromosome Location	chr5:74001699-74001700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73981038..73983852-chr5:73999852..74002635,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16872211	1.00[AMR][1000 genomes]
rs16872254	0.84[AFR][1000 genomes]
rs2314938	0.84[AFR][1000 genomes]
rs58054246	0.88[AFR][1000 genomes]
rs58159376	0.84[AFR][1000 genomes]
rs61547995	0.84[AFR][1000 genomes]
rs73114766	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114780	0.92[AFR][1000 genomes]
rs73114783	0.88[AFR][1000 genomes]
rs73114784	0.88[AFR][1000 genomes]
rs73114790	0.84[AFR][1000 genomes]
rs73116705	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-74002200	Weak transcription	Fetal Brain Female	brain
2	chr5:73982000-74017400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
5	chr5:73982400-74002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:73983000-74017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
8	chr5:73983200-74002200	Weak transcription	Esophagus	oesophagus
9	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
10	chr5:73983400-74016000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr5:73984400-74002200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr5:73984600-74002600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:73985000-74002600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr5:73985200-74002600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:73987200-74017400	Weak transcription	Fetal Kidney	kidney
16	chr5:73987600-74014800	Weak transcription	Fetal Lung	lung
17	chr5:73988400-74021000	Weak transcription	Right Ventricle	heart
18	chr5:73989800-74002200	Weak transcription	Brain Angular Gyrus	brain
19	chr5:73989800-74002600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:73990000-74016200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:73990400-74013600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:73991600-74002200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:73991800-74002400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:73993000-74002200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:73993000-74002200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:73993400-74014400	Weak transcription	Stomach Mucosa	stomach
27	chr5:73993400-74017400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr5:73993800-74014600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:73993800-74014600	Weak transcription	HSMMtube	muscle
30	chr5:73993800-74019800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:73995000-74009800	Weak transcription	HMEC	breast
32	chr5:73995400-74002200	Weak transcription	Gastric	stomach
33	chr5:73996800-74002600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:73997600-74002000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:73997600-74002200	Strong transcription	Liver	Liver
36	chr5:73997600-74002600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:73997600-74002600	Strong transcription	Adipose Nuclei	Adipose
38	chr5:73998000-74002200	Strong transcription	Placenta	Placenta
39	chr5:73998200-74001800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:73998200-74002400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:73998200-74002600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr5:73998200-74002600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:73998200-74002600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:73998200-74002600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:73998200-74002600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr5:73998200-74002600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr5:73998400-74002200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr5:73998400-74002600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr5:73998400-74002600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:73998400-74002600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links