The 2.0 version of rSNPBase

Variant report

Variant rs58054246
Chromosome Location chr5:74043181-74043182
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:73982000-74061800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:73999800-74060800 Weak transcription Pancreas Pancrea
3 chr5:73999800-74062200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:74002600-74051600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:74002600-74061800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr5:74008400-74047800 Strong transcription Placenta Placenta
7 chr5:74008400-74060200 Strong transcription Primary monocytes fromperipheralblood blood
8 chr5:74008400-74060200 Strong transcription Monocytes-CD14+_RO01746 blood
9 chr5:74008600-74044200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr5:74010200-74048000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr5:74010400-74059600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr5:74011200-74044200 Strong transcription HUES64 Cell Line embryonic stem cell
13 chr5:74012000-74051600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:74012200-74050400 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr5:74013400-74047400 Strong transcription Adipose Nuclei Adipose
16 chr5:74014400-74047800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:74014400-74051600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr5:74015200-74048600 Weak transcription Stomach Mucosa stomach
19 chr5:74016400-74052400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr5:74018000-74060800 Weak transcription Gastric stomach
21 chr5:74018600-74062000 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr5:74018800-74049000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr5:74019200-74058600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:74021600-74060800 Weak transcription Spleen Spleen
25 chr5:74021800-74046600 Weak transcription Fetal Brain Male brain
26 chr5:74022000-74060800 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr5:74022800-74052000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr5:74023400-74047600 Strong transcription Fetal Thymus thymus
29 chr5:74023800-74048600 Strong transcription Primary B cells from peripheral blood blood
30 chr5:74024200-74049400 Strong transcription Rectal Mucosa Donor 29 rectum
31 chr5:74025000-74062000 Weak transcription Aorta Aorta
32 chr5:74027400-74052000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr5:74028400-74044000 Strong transcription Dnd41 blood
34 chr5:74029600-74052200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr5:74031800-74045600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr5:74031800-74046400 Weak transcription H9 Cell Line embryonic stem cell
37 chr5:74031800-74052600 Weak transcription Small Intestine intestine
38 chr5:74032000-74043800 Weak transcription Esophagus oesophagus
39 chr5:74032000-74054200 Weak transcription Lung lung
40 chr5:74033000-74044400 Weak transcription Fetal Intestine Small intestine
41 chr5:74033000-74046200 Weak transcription Thymus Thymus
42 chr5:74033400-74044400 Weak transcription Fetal Stomach stomach
43 chr5:74033800-74053000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr5:74034200-74045800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr5:74035800-74046000 Weak transcription Placenta Amnion Placenta Amnion
46 chr5:74036200-74043800 Weak transcription Fetal Heart heart
47 chr5:74036200-74046000 Weak transcription NHLF lung
48 chr5:74037000-74049600 Strong transcription HSMM muscle
49 chr5:74037400-74043800 Strong transcription iPS-20b Cell Line embryonic stem cell
50 chr5:74037400-74047400 Strong transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015