Variant report

Variant	rs59117660
Chromosome Location	chr5:74172453-74172454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74161003..74163055-chr5:74170808..74173347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271714	Chromatin interaction
ENSG00000198780	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12108923	1.00[AMR][1000 genomes]
rs12110114	1.00[AMR][1000 genomes]
rs13340354	0.90[AFR][1000 genomes]
rs16872254	1.00[AMR][1000 genomes]
rs16872290	1.00[AMR][1000 genomes]
rs16872303	1.00[AMR][1000 genomes]
rs16872322	1.00[AMR][1000 genomes]
rs16872334	1.00[AMR][1000 genomes]
rs16872357	1.00[AMR][1000 genomes]
rs2314938	1.00[AMR][1000 genomes]
rs57716237	1.00[AMR][1000 genomes]
rs58054246	1.00[AMR][1000 genomes]
rs58159376	1.00[AMR][1000 genomes]
rs61547995	1.00[AMR][1000 genomes]
rs73114780	1.00[AMR][1000 genomes]
rs73114783	1.00[AMR][1000 genomes]
rs73114784	1.00[AMR][1000 genomes]
rs73114790	1.00[AMR][1000 genomes]
rs73114800	1.00[AMR][1000 genomes]
rs73116705	1.00[AMR][1000 genomes]
rs73116719	1.00[AMR][1000 genomes]
rs73116732	1.00[AMR][1000 genomes]
rs73116736	1.00[AMR][1000 genomes]
rs73120624	1.00[AMR][1000 genomes]
rs73120628	1.00[AMR][1000 genomes]
rs73120630	1.00[AMR][1000 genomes]
rs73120638	1.00[AMR][1000 genomes]
rs73120654	1.00[AMR][1000 genomes]
rs73120662	1.00[AMR][1000 genomes]
rs73122656	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74169400-74173000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74171800-74172600	Flanking Active TSS	HepG2	liver
3	chr5:74171800-74174800	Enhancers	Liver	Liver
4	chr5:74172000-74172600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:74172000-74172600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:74172000-74173800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:74172200-74172600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:74172200-74172600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:74172200-74172600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:74172200-74172600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:74172200-74172600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr5:74172200-74172600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:74172200-74173800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:74172200-74174000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:74172400-74173200	Enhancers	Brain Anterior Caudate	brain
16	chr5:74172400-74173200	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:74172400-74173400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:74172400-74173400	Weak transcription	Brain Substantia Nigra	brain
19	chr5:74172400-74173800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:74172400-74173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:74172400-74174000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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