Variant report

Variant	rs16872334
Chromosome Location	chr5:74146249-74146250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:74145723-74146262	HepG2	liver:	n/a	n/a
2	EP300	chr5:74145727-74146264	HepG2	liver:	n/a	chr5:74145795-74145804 chr5:74146164-74146178
3	MAX	chr5:74145823-74146285	HepG2	liver:	n/a	n/a
4	POLR2A	chr5:74145390-74146451	HepG2	liver:	n/a	n/a
5	EP300	chr5:74145708-74146339	HepG2	liver:	n/a	chr5:74145795-74145804 chr5:74146164-74146178
6	CEBPB	chr5:74145983-74146351	HepG2	liver:	n/a	chr5:74146163-74146176 chr5:74146287-74146299 chr5:74146163-74146176 chr5:74146163-74146174
7	TEAD4	chr5:74145622-74146347	HepG2	liver:	n/a	n/a
8	MYBL2	chr5:74145757-74146411	HepG2	liver:	n/a	n/a
9	CEBPB	chr5:74146020-74146274	HepG2	liver:	n/a	chr5:74146163-74146176 chr5:74146163-74146176 chr5:74146163-74146174
10	SP1	chr5:74145715-74146335	HepG2	liver:	n/a	n/a
11	NFIC	chr5:74145659-74146346	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
FAM169A	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12108923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872254	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872290	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2314938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57716237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58054246	1.00[AMR][1000 genomes]
rs58159376	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59117660	1.00[AMR][1000 genomes]
rs61547995	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114780	1.00[AMR][1000 genomes]
rs73114783	1.00[AMR][1000 genomes]
rs73114784	1.00[AMR][1000 genomes]
rs73114790	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114800	1.00[AMR][1000 genomes]
rs73116705	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116719	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116736	1.00[AMR][1000 genomes]
rs73120624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120628	1.00[AMR][1000 genomes]
rs73120630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120654	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120662	1.00[AMR][1000 genomes]
rs73122656	1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:74127400-74148000	Weak transcription	Brain Angular Gyrus	brain
4	chr5:74130600-74147000	Weak transcription	HMEC	breast
5	chr5:74135000-74146600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:74135000-74147000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:74135200-74147400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:74135400-74146800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:74135400-74146800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:74135400-74147000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:74140200-74146800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:74140200-74157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:74142800-74151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:74143000-74147400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:74143200-74147400	Weak transcription	NHDF-Ad	bronchial
17	chr5:74143600-74149200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:74143800-74146400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr5:74144400-74147000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:74144400-74147400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:74144400-74147800	Enhancers	Brain Substantia Nigra	brain
22	chr5:74144400-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:74144600-74148800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr5:74144800-74146800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr5:74144800-74147200	Weak transcription	A549	lung
26	chr5:74145000-74146800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:74145200-74146800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:74145600-74146800	Weak transcription	Aorta	Aorta
29	chr5:74145600-74147000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr5:74145600-74147200	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:74145600-74149200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:74145800-74146800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:74145800-74146800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:74145800-74147200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr5:74146000-74147000	Enhancers	Primary hematopoietic stem cells	blood
36	chr5:74146000-74148400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr5:74146000-74151200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr5:74146200-74146400	Flanking Active TSS	HepG2	liver
39	chr5:74146200-74146600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:74146200-74146600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:74146200-74147000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr5:74146200-74147000	Weak transcription	Brain Anterior Caudate	brain
43	chr5:74146200-74147000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:74146200-74147000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr5:74146200-74147000	Enhancers	NHEK	skin
46	chr5:74146200-74147800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr5:74146200-74148600	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr5:74146200-74148800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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