Variant report

Variant	rs16872303
Chromosome Location	chr5:74126342-74126343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12108923	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872357	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2314938	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57716237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58054246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58159376	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59117660	1.00[AMR][1000 genomes]
rs61547995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114780	1.00[AMR][1000 genomes]
rs73114783	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114790	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114800	1.00[AMR][1000 genomes]
rs73116705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116719	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116736	1.00[AMR][1000 genomes]
rs73120624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120628	1.00[AMR][1000 genomes]
rs73120630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120662	1.00[AMR][1000 genomes]
rs73122656	1.00[AMR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74064400-74134600	Weak transcription	Fetal Brain Male	brain
2	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:74074800-74143400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:74087600-74130000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:74095800-74146000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:74096000-74131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:74096000-74134200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:74096000-74134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:74096000-74137200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:74096000-74137200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:74096200-74134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:74096400-74129600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:74096400-74133800	Weak transcription	Fetal Thymus	thymus
14	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:74098200-74129200	Weak transcription	Primary T cells from cord blood	blood
16	chr5:74101200-74131600	Weak transcription	Dnd41	blood
17	chr5:74101200-74132200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:74101200-74136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:74108400-74134200	Weak transcription	Thymus	Thymus
20	chr5:74109800-74129600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:74112600-74129400	Weak transcription	HMEC	breast
22	chr5:74112800-74130200	Weak transcription	NHEK	skin
23	chr5:74112800-74144400	Weak transcription	A549	lung
24	chr5:74112800-74144800	Weak transcription	Brain Anterior Caudate	brain
25	chr5:74113000-74130600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:74113800-74129800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:74115200-74127800	Strong transcription	HepG2	liver
28	chr5:74115200-74137400	Weak transcription	Ovary	ovary
29	chr5:74116200-74146000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:74118200-74127000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:74118400-74129600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:74118400-74139800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:74118800-74128600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:74118800-74139600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:74120200-74128800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr5:74120200-74129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:74120200-74129400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr5:74122000-74127600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:74122400-74128800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:74123000-74134200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:74123600-74134600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr5:74124200-74127600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:74124200-74128800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:74124600-74129400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr5:74124800-74129400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr5:74124800-74130400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:74125200-74128000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr5:74125200-74128600	Weak transcription	Liver	Liver
49	chr5:74125600-74129600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr5:74125800-74128800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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