Variant report

Variant	rs73122656
Chromosome Location	chr5:74212425-74212426
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12108923	1.00[AMR][1000 genomes]
rs12110114	1.00[AMR][1000 genomes]
rs13340354	0.83[AFR][1000 genomes]
rs16872254	1.00[AMR][1000 genomes]
rs16872290	1.00[AMR][1000 genomes]
rs16872303	1.00[AMR][1000 genomes]
rs16872322	1.00[AMR][1000 genomes]
rs16872334	1.00[AMR][1000 genomes]
rs16872357	1.00[AMR][1000 genomes]
rs2314938	1.00[AMR][1000 genomes]
rs57716237	1.00[AMR][1000 genomes]
rs58054246	1.00[AMR][1000 genomes]
rs58159376	1.00[AMR][1000 genomes]
rs59117660	1.00[AMR][1000 genomes]
rs61547995	1.00[AMR][1000 genomes]
rs73114780	1.00[AMR][1000 genomes]
rs73114783	1.00[AMR][1000 genomes]
rs73114784	1.00[AMR][1000 genomes]
rs73114790	1.00[AMR][1000 genomes]
rs73114800	1.00[AMR][1000 genomes]
rs73116705	1.00[AMR][1000 genomes]
rs73116719	1.00[AMR][1000 genomes]
rs73116732	1.00[AMR][1000 genomes]
rs73116736	1.00[AMR][1000 genomes]
rs73120624	1.00[AMR][1000 genomes]
rs73120628	1.00[AMR][1000 genomes]
rs73120630	1.00[AMR][1000 genomes]
rs73120638	1.00[AMR][1000 genomes]
rs73120654	1.00[AMR][1000 genomes]
rs73120662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74210200-74214000	Enhancers	Stomach Mucosa	stomach
2	chr5:74210400-74213800	Enhancers	HepG2	liver
3	chr5:74211200-74213800	Enhancers	Liver	Liver
4	chr5:74212000-74213600	Enhancers	Hela-S3	cervix
5	chr5:74212400-74212800	Enhancers	HSMM	muscle
6	chr5:74212400-74213200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:74212400-74213200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:74212400-74213200	Flanking Active TSS	A549	lung
9	chr5:74212400-74213200	Enhancers	HUVEC	blood vessel
10	chr5:74212400-74213400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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