Variant report

Variant	rs7311756
Chromosome Location	chr12:40370173-40370174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10506138	0.88[GIH][hapmap]
rs10877867	0.83[ASN][1000 genomes]
rs11174292	0.88[GIH][hapmap]
rs11174370	1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs11174536	0.80[EUR][1000 genomes]
rs11564221	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.88[ASN][1000 genomes]
rs12810368	0.85[ASN][1000 genomes]
rs12827948	0.85[ASN][1000 genomes]
rs73280629	0.89[ASN][1000 genomes]
rs992851	0.88[GIH][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40364400-40391400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:40366400-40371800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:40366400-40390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:40369400-40370200	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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