Variant report

Variant	rs73118070
Chromosome Location	chr7:39350411-39350412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11981474	0.82[ASN][1000 genomes]
rs4358689	0.86[ASN][1000 genomes]
rs4377848	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951074	1.00[ASN][1000 genomes]
rs6960580	1.00[ASN][1000 genomes]
rs6964993	0.99[ASN][1000 genomes]
rs6968121	1.00[ASN][1000 genomes]
rs73121820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128427	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802044	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39339600-39353600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39349400-39350800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:39349400-39350800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:39349400-39351000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:39349400-39351200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:39349400-39352000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:39349600-39351000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:39349800-39350800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:39350000-39350600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:39350000-39350800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:39350200-39350600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr7:39350200-39350600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:39350200-39350600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:39350200-39350600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:39350200-39350800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:39350200-39350800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:39350400-39350600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:39350400-39350600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:39350400-39350600	Enhancers	Esophagus	oesophagus
20	chr7:39350400-39350600	Bivalent Enhancer	Left Ventricle	heart
21	chr7:39350400-39350600	ZNF genes & repeats	Pancreas	Pancrea
22	chr7:39350400-39350800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:39350400-39350800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links